Package: MEGENA 1.6

MEGENA: Multiscale Clustering of Geometrical Network

Co-Expression Network Analysis by adopting network embedding technique. Song W.-M., Zhang B. (2015) Multiscale Embedded Gene Co-expression Network Analysis. PLoS Comput Biol 11(11): e1004574. <doi:10.1371/journal.pcbi.1004574>.

Authors:Won-Min Song, Bin Zhang

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MEGENA.pdf |MEGENA.html✨
MEGENA/json (API)

# Install 'MEGENA' in R:
install.packages('MEGENA', repos = c('https://songw01.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/songw01/megena/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

cpp

6.82 score 49 stars 1 packages 45 scripts 320 downloads 23 mentions 19 exports 74 dependencies

Last updated 1 years agofrom:8f4f98e4d4. Checks:1 OK, 11 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 04 2025
R-4.5-win-x86_64WARNINGMar 04 2025
R-4.5-mac-x86_64WARNINGMar 04 2025
R-4.5-mac-aarch64WARNINGMar 04 2025
R-4.5-linux-x86_64WARNINGMar 04 2025
R-4.4-win-x86_64WARNINGMar 04 2025
R-4.4-mac-x86_64WARNINGMar 04 2025
R-4.4-mac-aarch64WARNINGMar 04 2025
R-4.4-linux-x86_64WARNINGMar 04 2025
R-4.3-win-x86_64WARNINGMar 04 2025
R-4.3-mac-x86_64WARNINGMar 04 2025
R-4.3-mac-aarch64WARNINGMar 04 2025

Exports:calculate.PFNcalculate.rho.signedcompute.PFN.pardo.MEGENAdraw_sunburst_wt_fillget_module_hierarchy_graphget.DegreeHubStatisticget.hub.summaryget.union.cutMEGENA.ModuleSummarymodule_convert_to_tableoutput.geneSet.fileperform.AllPairs.FETperform.ijPairs.FETplanaritytestplot_moduleplot_module_hierarchyplot_subgraphread.geneSet

Dependencies:BHcachemclasscliclustercodetoolscolorspacecpp11DEoptimRdiptestdoParalleldplyrfansifarverfastmapflexmixforeachfpcgenericsggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragtableigraphimputeisobanditeratorsjsonlitekernlablabelinglatticelifecyclemagrittrMASSMatrixmclustmemoisemgcvmodeltoolsmunsellnlmennetpillarpkgconfigplyrpolyclipprabcluspurrrR6RColorBrewerRcppRcppArmadilloRcppEigenreshaperlangrobustbasescalesstringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithr